extract_target_location: extract_target_location: Extract the target location of the...

In elhumble/primerdesignR: R package for designing primers

Description

extract_target_location: Extract the target location of the genome as a fasta sequence.

Usage

extract_target_location(chr, start, end, outdir, bedtoolspath, genomepath)

Arguments

chr	Specify the scaffold, contig or chromosome in which gene is located.
start	Specify the start coordinate of the sequence to be extracted.
end	Specify the end coordinate of the sequence to be extracted.
outdir	Specify the path of the directory in which the output file should be written.
bedtoolspath	Specifiy the path of the directory in which the bedtools executable is stored.
genomepath	Specifiy the path of the directory in which your blast database is stored.

elhumble/primerdesignR documentation built on May 16, 2019, 2:59 a.m.