abundance | Get or set species abundances |
aed | Abundance-weighted evolutionary distinctiveness |
caterpillar | Caterpillar plots |
coerce | Extract phylo4com phylogenies |
communities | List communities |
ecoPD-package | Ecologically-informed phylodiversity metrics in R |
Families | Plant family lookup vector |
genera | Extract genus names |
iac | Imbalance of Abundances at the Clade level |
LookupTL | Family-based lookup table for minimum tip lengths |
minTL | Get or set minimum tip lengths |
pae | Phylogenetic-Abundance Evenness |
pairdist | Calculate pairwise distances between nodes |
pd_from_Cadotte | Calculate phylogenetic diversity |
phylo4com | Create community phylogenies object |
phylo4com-class | phylo4com class |
richness | Calculate richness for each community |
shannon | Shannon diversity index |
simpson | Phylogenetic Simpson's diversity index |
siteBySpecies | Generate site-by-species matrix |
Supertree | Reference plant phylogeny |
tipLength | Calculate distance to tips from ancestors |
weeds | Weed phylogeny and community data |
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