SegmentedCellExperiment-package: 'SegmentedCellExperiment' package
In ellispatrick/SegmentedCellExperiment: S4 Class for segmented spatial 'omics data
Description
This package describes an S4 class for storing data from segmented
imaging cytometry and spatial omics data. It extends DataFrame and defines
methods that take advantage of DataFrame nesting to represent elements of
cell-based experiments with spatial orientation that are commonly
encountered. This object is able to store information on a cell's spatial
location, cellType, morphology, intensity of gene/protein marks as well as
image level phenotype information.
Details
Development version can be found on
GitHub
ellispatrick/SegmentedCellExperiment documentation built on Feb. 24, 2020, 3:14 p.m.
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Description
This package describes an S4 class for storing data from segmented imaging cytometry and spatial omics data. It extends DataFrame and defines methods that take advantage of DataFrame nesting to represent elements of cell-based experiments with spatial orientation that are commonly encountered. This object is able to store information on a cell's spatial location, cellType, morphology, intensity of gene/protein marks as well as image level phenotype information.
Details
Development version can be found on GitHub
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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