parameter_table: Data.frame of parameter values
In ellisztamas/simmiad: Simulations of Emmer wheat at the Ammiad kibbutz

parameter_table

R Documentation

Data.frame of parameter values

Description

Data.frame of parameter values

Usage

parameter_table(
  mean_dispersal_distance,
  outcrossing_rate,
  n_generations,
  n_starting_genotypes,
  density,
  nsims,
  n_sample_points,
  sample_spacing,
  range_limit,
  years_to_sample,
  dormancy,
  habitat_width = (n_sample_points * sample_spacing * range_limit),
  population_size = density * habitat_width^2,
  var_w
)

Arguments

`mean_dispersal_distance`	Float >0. Mean seed dispersal distance. The reciprocal of this is used as the rate parameter to draw from the exponential distribution.
`outcrossing_rate`	Float between 0 and 1. Probability that an individual is outcrossed.
`n_generations`	Int >12. Number of generations to run the simulations.
`n_starting_genotypes`	Int >0. Number of initial genotypes to start with. Defaults to 50
`density`	Float >0. Average density of plants per square metre.
`nsims`	Int >0. Number of replicate populations to simulate.
`n_sample_points`	Number of points to sample along the transect.
`sample_spacing`	Distance between sampling points.
`range_limit`	Float >1 defining how much wider than the transect the width of the habitat should be. This, along with plant density, determines how many plants will be simulated. Defaults to 1.5. Ignored if `pop_structure="hardcoded"`
`years_to_sample`	Vector of integers indexing which generations to sample the transect to calculate spatial structure and temporal stability. Defaults to the last 36 generations of the simulation
`dormancy`	Float between 0 and 1. Probability that a seedling is drawn from the seed bank. Seedlings are drawn from the prior generation with probability 1-dormancy.
`habitat_width`	Length of the edge of the habitat square
`population_size`	Number of individual plants in the population, derived from the habitat size and population density
`var_w`	Additive variance for (log) fitness. Defaults to zero (no selection).