plotPotentialSNPs: Plot distribution of beta values for array probes that were...
In elnitskilab/MethylToSNP: This method identifies novel SNPs in Illumina DNA methylation array data
Description
Usage
Arguments
Examples
Description
Plot distribution of beta values for array probes that were identified as SNPs
Usage
1
plotPotentialSNPs(x, betas, horizontal = TRUE)
Arguments
x
a data frame with probes identified as SNPs by MethylToSNP()
betas
A matrix or a data frame or an GenomicRatioSet, GenomicMethylSet, MethylSet, or RatioSet object (see minfi package)
horizontal
plot orientation (horizontal=TRUE by default)
Examples
1
2
x <- MethylToSNP(betas)
x <- plotPotentialSNPs(x, data)
elnitskilab/MethylToSNP documentation built on March 21, 2020, 1:13 p.m.
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Description Usage Arguments Examples
Description
Plot distribution of beta values for array probes that were identified as SNPs
Usage
1 | plotPotentialSNPs(x, betas, horizontal = TRUE)
|
Arguments
x |
a data frame with probes identified as SNPs by MethylToSNP() |
betas |
A matrix or a data frame or an GenomicRatioSet, GenomicMethylSet, MethylSet, or RatioSet object (see minfi package) |
horizontal |
plot orientation (horizontal=TRUE by default) |
Examples
1 2 | x <- MethylToSNP(betas)
x <- plotPotentialSNPs(x, data)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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