PrepareILoReg: Prepare 'SingleCellExperiment' object for 'ILoReg' analysis

In elolab/ILoReg: ILoReg: a tool for high-resolution cell population identification from scRNA-Seq data

Prepare SingleCellExperiment object for ILoReg analysis

Description

This function prepares the SingleCellExperiment object for ILoReg analysis. The only required input is an object of class SingleCellExperiment with at least data in the logcounts slot.

Usage

PrepareILoReg.SingleCellExperiment(object)

## S4 method for signature 'SingleCellExperiment'
PrepareILoReg(object)

Arguments

object

an object of SingleCellExperiment class

Value

an object of SingleCellExperiment class

Examples

library(SingleCellExperiment)
sce <- SingleCellExperiment(assays = list(logcounts = pbmc3k_500))
sce <- PrepareILoReg(sce)

elolab/ILoReg documentation built on March 28, 2022, 1:17 a.m.