OTUscreen: Screening OTUs
In elong0527/MicroTDC: Nonparametric Microbial Interdependence Test (NMIT)
Description
Usage
Arguments
Value
Description
Keep major taxa with a predefined error rate and percentage threshold
Usage
1
OTUscreen(ana, error_rate = 0.1, pct_threshold = 20)
Arguments
ana
a phyloseq object with counts/relative abundance OTU table
error_rate
error rate percentage, the default is 0.1 percent
pct_threshold
occurance percentage threshold, the default percentage threshold is 20 percent
Value
a phyloseq object with major taxa
elong0527/MicroTDC documentation built on May 23, 2020, 9:12 p.m.
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Description Usage Arguments Value
Description
Keep major taxa with a predefined error rate and percentage threshold
Usage
1 | OTUscreen(ana, error_rate = 0.1, pct_threshold = 20)
|
Arguments
ana |
a phyloseq object with counts/relative abundance OTU table |
error_rate |
error rate percentage, the default is 0.1 percent |
pct_threshold |
occurance percentage threshold, the default percentage threshold is 20 percent |
Value
a phyloseq object with major taxa
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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