Man pages for emauryg/STRAND_R
Structural TensoR ANalysis and Decomposition (STRAND)
| calculate_Chat_ts | Compute the estimated count matrix from tenosr signature... |
| calculate_T_ts | Calculate T tensor from TensorSignature model |
| compute_deviance | Compute the deviance of a model |
| deviance_curve | Compute the deviance curve to estimate the number of clusters |
| estimateEffect | Compute the estimated effect of the model covariates on... |
| fit_TS | Fit TensorSignature model |
| generate_data | Generate sample data from the structural topic model... |
| init_tensorsig | Initialize TensorSignature algorithm |
| make_96plot | Generate plot of trinucleotide contexts |
| make_m__ | Calculate the missing rates |
| NMFinit | Initialize parameters for variational EM algorithm |
| plot_factors | Plots factor matrices |
| random_init | Initialize using random intiial values |
| runEM | Main function to run the Variational EM algorithm |
| stack | Generate stacked T0 tensor |
| tf | Function to compute the product of the stacked tensor T0, and... |
| transform_E | Compute the exposure matrix from a TensorSignature model |
