Files in emilio-berti/taxclean
Clean taxonomy using regex, taxize, and rgbif
.Rbuildignore
.Rproj.user/E4971820/sources/prop/629A4D14
.Rproj.user/E4971820/sources/prop/7100D2B6
.Rproj.user/E4971820/sources/prop/INDEX
.Rproj.user/shared/notebooks/patch-chunk-names
.gitignore
DESCRIPTION
NAMESPACE
R/FinBIF.R
R/RTNRS.R
R/algaeClassify.R
R/combine_intermediate_results.R
R/explore_pipelines.R
R/figure_multinet.R
R/lcvplants.R
R/orthographic_distance.R
R/pipe_biotime.R
R/pipe_function.R
R/pipeline.R
R/rcol.R
R/rentrez.R
R/rgbif.R
R/rgnparser.R
R/rotl.R
R/rredlist.R
R/rtaxref.R
R/split_biotime.R
R/taxclean.R
R/utilities.R
R/zbank.R
biotime.csv
data/actinopt.csv
data/biotime.rds
data/biotime_actinopt.csv
data/biotime_algae.csv
data/biotime_animals.csv
data/biotime_bacteria.csv
data/biotime_fungi.csv
data/biotime_plants.csv
datasets.csv
man/check_epithets_match.Rd
man/find_gbif.Rd
man/fix_typos.Rd
man/gbif_table.Rd
man/gbif_tax_res.Rd
man/hello.Rd
man/orthographic_dist.Rd
man/pipelines_outline.odg
man/pipelines_outline.pdf
man/rm_abbr.Rd
man/rm_cf.Rd
man/rm_extra.Rd
man/rm_punct.Rd
man/rm_typos.Rd
man/rm_var.Rd
man/rm_whitespace.Rd
man/write_pipeline.Rd
pipelines/pipeline_result.csv
pipelines/template.R
plant_example.Rmd
taxclean.Rproj
tools/FinBIF.R
tools/algaeClassify.R
tools/algaeClassify.txt
tools/compare_tools.R
tools/fishtree.R
tools/orthographic_distance.R
tools/pipeline.R
tools/rcol.R
tools/rgnparser.R
tools/rgnparser.txt
tools/ritis.R
tools/rotl.R
tools/rotl.txt
tools/rredlist.R
tools/taxa.R
tools/taxalight.R
tools/taxclean.R
tools/taxize.R
tools/taxizedb.R
tools/vegtable.R
