signif_assess: Significance assessment

In emosca-cnr/mND: Gene relevance based on multiple evidences in complex networks

Significance assessment

Description

Significance assessment: empirical p-values are calculated by using the pool of r permuted versions of X0 (clearly, use this function only if 'perm_X0' function was used).

Usage

signif_assess(mND = NULL, BPPARAM = NULL)

Arguments

mND	list; output of 'mND' function
BPPARAM	optional BiocParallelParam instance determining the parallel back-end to be used during evaluation. If NULL, parallel evaluation is disabled using SerialParam(). See ?bplapply.

Value

list with:

• mND: mND score (mND), corrisponding empirical p-value (p), product of mND score and -log10(p) (mNDp)

• t: sum of top k first neighbours

• pl: corrisponding empirical p-values of (t)

• tp: product of the sum of top k neighbours (t) and -log10(pl)

emosca-cnr/mND documentation built on April 11, 2024, 12:49 p.m.