API for emvolz-phylodynamics/treedater-dev
Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
| Global functions | |
|---|---|
| .Ti2blen | Source code |
| .dater | Source code |
| .fitDiagnostics | Source code |
| .fix.Ti | Source code |
| .hack.times1 | Source code |
| .make.tree.data | Source code |
| .optim.Ti0 | Source code |
| .optim.Ti2 | Source code |
| .optim.Ti5.constrained.limsolve | Source code |
| .optim.nbinom1 | Source code |
| .optim.omega.poisson0 | Source code |
| .optim.omegas.gammaPoisson1 | Source code |
| .optim.omegas.gammaPoisson2 | Source code |
| .optim.r.gammatheta.nbinom0 | Source code |
| .optim.sampleTimes0 | Source code |
| boot | Man page Source code |
| dater | Man page Source code |
| goodnessOfFitPlot | Man page Source code |
| outlierLineages | Man page Source code |
| outlierTips | Man page Source code |
| parboot | Man page Source code |
| plot.bootTreedater | Man page Source code |
| print.boot.treedater | Source code |
| print.treedater | Source code |
| relaxedClockTest | Man page Source code |
| rootToTipRegressionPlot | Man page Source code |
| sampleYearsFromLabels | Man page Source code |
| summary.treedater | Source code |
| treedater | Man page |
| treedater-package | Man page |
