Man pages for emvolz-phylodynamics/treedater-dev
Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
| boot | Estimate of confidence intervals of molecular clock... |
| dater | Estimate a time-scaled tree and fit a molecular clock |
| goodnessOfFitPlot | Produce a goodness of fit plot |
| outlierLineages | Detect lineages with unusually large evolutionary divergence... |
| outlierTips | Detect terminal lineages with unusually large evolutionary... |
| parboot | Estimate of confidence intervals using parametric bootstrap... |
| plot.bootTreedater | Plots lineages through time and confidence intervals... |
| relaxedClockTest | Use parametric bootstrap to test if relaxed clock offers... |
| rootToTipRegressionPlot | Plot evolutionary distance from root to sample times and... |
| sampleYearsFromLabels | Compute a vector of numeric sample times from labels in a... |
| treedater-package | treedater fits a molecular clock to a phylogenetic tree and... |
