emvolz-phylodynamics/treestructure: Detect Population Structure Within Phylogenetic Trees

Algorithms for detecting population structure from the history of coalescent events recorded in phylogenetic trees. This method classifies each tip and internal node of a tree into disjoint sets characterized by similar coalescent patterns. The methods are described in Volz, E., Wiuf, C., Grad, Y., Frost, S., Dennis, A., & Didelot, X. (2020) <doi:10.1093/sysbio/syaa009>.

Getting started

Package details

AuthorErik Volz
MaintainerErik Volz <erik.volz@gmail.com>
LicenseGPL (>= 2)
Version0.6.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("emvolz-phylodynamics/treestructure")
emvolz-phylodynamics/treestructure documentation built on March 1, 2025, 3:47 p.m.