Files in enblacar/SCpubr
Generate Publication Ready Visualizations of Single Cell Transcriptomics Data
.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/🐛---bug-report.md
.github/ISSUE_TEMPLATE/💭---feature-request.md
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
CRAN-SUBMISSION
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/data.R
R/do_AffinityAnalysisPlot.R
R/do_AlluvialPlot.R
R/do_BarPlot.R
R/do_BeeSwarmPlot.R
R/do_BoxPlot.R
R/do_CellularStatesPlot.R
R/do_ChordDiagramPlot.R
R/do_ColorPalette.R
R/do_CopyNumberVariantPlot.R
R/do_CorrelationPlot.R
R/do_DiffusionMapPlot.R
R/do_DimPlot.R
R/do_DotPlot.R
R/do_EnrichmentHeatmap.R
R/do_ExpressionHeatmap.R
R/do_FeaturePlot.R
R/do_GeyserPlot.R
R/do_GroupwiseDEPlot.R
R/do_LigandReceptorPlot.R
R/do_LoadingsPlot.R
R/do_MetadataPlot.R
R/do_NebulosaPlot.R
R/do_PathwayActivityPlot.R
R/do_RidgePlot.R
R/do_SCEnrichmentHeatmap.R
R/do_SCExpressionHeatmap.R
R/do_TFActivityPlot.R
R/do_TermEnrichmentPlot.R
R/do_ViolinPlot.R
R/do_VolcanoPlot.R
R/do_WafflePlot.R
R/globals.R
R/save_Plot.R
R/utils.R
R/zzz.R
README.md
cran-comments.md
data/human_chr_locations.rda
inst/CITATION
inst/extdata/de_genes_example.rds
inst/extdata/dorothea_activities_example.rds
inst/extdata/enriched_terms_example.rds
inst/extdata/genes_example.rds
inst/extdata/infercnv_object_example.rds
inst/extdata/infercnv_object_metacells_example.rds
inst/extdata/liana_output_example.rds
inst/extdata/metacell_mapping_example.rds
inst/extdata/progeny_activities_example.rds
inst/extdata/seurat_dataset_example.rds
man/do_AffinityAnalysisPlot.Rd
man/do_AlluvialPlot.Rd
man/do_BarPlot.Rd
man/do_BeeSwarmPlot.Rd
man/do_BoxPlot.Rd
man/do_CellularStatesPlot.Rd
man/do_ChordDiagramPlot.Rd
man/do_ColorPalette.Rd
man/do_CopyNumberVariantPlot.Rd
man/do_CorrelationPlot.Rd
man/do_DiffusionMapPlot.Rd
man/do_DimPlot.Rd
man/do_DotPlot.Rd
man/do_EnrichmentHeatmap.Rd
man/do_ExpressionHeatmap.Rd
man/do_FeaturePlot.Rd
man/do_GeyserPlot.Rd
man/do_GroupwiseDEPlot.Rd
man/do_LigandReceptorPlot.Rd
man/do_LoadingsPlot.Rd
man/do_MetadataPlot.Rd
man/do_NebulosaPlot.Rd
man/do_PathwayActivityPlot.Rd
man/do_RidgePlot.Rd
man/do_SCEnrichmentHeatmap.Rd
man/do_SCExpressionHeatmap.Rd
man/do_TFActivityPlot.Rd
man/do_TermEnrichmentPlot.Rd
man/do_ViolinPlot.Rd
man/do_VolcanoPlot.Rd
man/do_WafflePlot.Rd
man/doc_function.Rd
man/examples/examples_do_AffinityAnalysisPlot.R
man/examples/examples_do_AlluvialPlot.R
man/examples/examples_do_BarPlot.R
man/examples/examples_do_BeeSwarmPlot.R
man/examples/examples_do_BoxPlot.R
man/examples/examples_do_CellularStatesPlot.R
man/examples/examples_do_ChordDiagramPlot.R
man/examples/examples_do_ColorPalette.R
man/examples/examples_do_CopyNumberVariantPlot.R
man/examples/examples_do_CorrelationPlot.R
man/examples/examples_do_DiffusionMapPlot.R
man/examples/examples_do_DimPlot.R
man/examples/examples_do_DotPlot.R
man/examples/examples_do_EnrichmentHeatmap.R
man/examples/examples_do_ExpressionHeatmap.R
man/examples/examples_do_FeaturePlot.R
man/examples/examples_do_GeyserPlot.R
man/examples/examples_do_GroupwiseDEPlot.R
man/examples/examples_do_LigandReceptorPlot.R
man/examples/examples_do_LoadingsPlot.R
man/examples/examples_do_MetadataPlot.R
man/examples/examples_do_NebulosaPlot.R
man/examples/examples_do_PathwayActivityPlot.R
man/examples/examples_do_RidgePlot.R
man/examples/examples_do_SCEnrichmentHeatmap.R
man/examples/examples_do_SCExpressionHeatmap.R
man/examples/examples_do_TFActivityPlot.R
man/examples/examples_do_TermEnrichmentPlot.R
man/examples/examples_do_ViolinPlot.R
man/examples/examples_do_VolcanoPlot.R
man/examples/examples_do_WafflePlot.R
man/examples/examples_save_Plot.R
man/figures/logo.png
man/human_chr_locations.Rd
man/named_list.Rd
man/named_vector.Rd
man/package_report.Rd
man/save_Plot.Rd
revdep/.gitignore
revdep/email.yml
tests/testthat.R
tests/testthat/setup.R
tests/testthat/test-do_AffinityAnalysisPlot.R
tests/testthat/test-do_AlluvialPlot.R
tests/testthat/test-do_BarPlot.R
tests/testthat/test-do_BeeSwarmPlot.R
tests/testthat/test-do_BoxPlot.R
tests/testthat/test-do_CellularStatesPlot.R
tests/testthat/test-do_ChordDiagramPlot.R
tests/testthat/test-do_ColorPalette.R
tests/testthat/test-do_CopyNumberVariantPlot.R
tests/testthat/test-do_CorrelationPlot.R
tests/testthat/test-do_DiffusionMapPlot.R
tests/testthat/test-do_DimPlot.R
tests/testthat/test-do_DotPlot.R
tests/testthat/test-do_EnrichmentHeatmap.R
tests/testthat/test-do_ExpressionHeatmap.R
tests/testthat/test-do_FeaturePlot.R
tests/testthat/test-do_GeyserPlot.R
tests/testthat/test-do_GroupwiseDEPlot.R
tests/testthat/test-do_LigandReceptorPlot.R
tests/testthat/test-do_LoadingsPlot.R
tests/testthat/test-do_MetadataPlot.R
tests/testthat/test-do_NebulosaPlot.R
tests/testthat/test-do_PathwayActivityPlot.R
tests/testthat/test-do_RidgePlot.R
tests/testthat/test-do_SCEnrichmentHeatmap.R
tests/testthat/test-do_SCExpressionHeatmap.R
tests/testthat/test-do_TFActivityPlot.R
tests/testthat/test-do_TermEnrichmentPlot.R
tests/testthat/test-do_ViolinPlot.R
tests/testthat/test-do_VolcanoPlot.R
tests/testthat/test-do_WafflePlot.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/reference_manual.Rmd
