heatmap_var_peaks: heatmap_var_peaks

In eonurk/cinaR: A Computational Pipeline for Bulk 'ATAC-Seq' Profiles

heatmap_var_peaks

Description

plot most variable k peaks (default k = 100) among all samples

Usage

heatmap_var_peaks(results, heatmap.peak.count = 100, ...)

Arguments

results	cinaR result object
heatmap.peak.count	number of peaks to be plotted. If number of peaks are less than k then all peaks will be used.
...	additional arguments for heatmap function, for more info '?pheatmap'

Value

ggplot object

Examples

library(cinaR)
data(atac_seq_consensus_bm) # calls 'bed'

# creating dummy results
results <- NULL
results[["cp"]] <- bed[,c(4:25)]

heatmap_var_peaks(results)

eonurk/cinaR documentation built on May 23, 2024, 7:08 a.m.