README.md
In epicentre-msf/covid19: Epidemiological covid-19 analysis and visualisation
COVID-19 Epi Dashboard
The goal of this dashboard is to provide an epidemiological overview of the COVID-19 pandemic, incorporating data from multiple sources.
It is being actively developed by the data science team at Epicentre MSF.
The tool is built using the R programming language and the shiny web framework. Packages used include the tidyverse, leaflet and highcharter.
Setup Data
To set up data for the app, source data-raw/data.R and data-raw/shapefiles.R.
Development
The primary shiny code can be found in the R/mod_map.R module.
Run in dev mode
To run the application, source dev/run_dev.R
Current data sources
European Centre for Disease Prevention and Control
Data on the geographic distribution of COVID-19 cases worldwide
Center for Systems Science and Engineering (CSSE) at Johns Hopkins University (JHU)
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
ACAPS COVID-19: Government Measures Dataset
Shapefiles
epicentre-msf/covid19 documentation built on April 5, 2023, 10:24 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
COVID-19 Epi Dashboard
The goal of this dashboard is to provide an epidemiological overview of the COVID-19 pandemic, incorporating data from multiple sources.
It is being actively developed by the data science team at Epicentre MSF.
The tool is built using the R programming language and the shiny web framework. Packages used include the tidyverse, leaflet and highcharter.
Setup Data
To set up data for the app, source data-raw/data.R and data-raw/shapefiles.R.
Development
The primary shiny code can be found in the R/mod_map.R module.
Run in dev mode
To run the application, source dev/run_dev.R
Current data sources
European Centre for Disease Prevention and Control
Data on the geographic distribution of COVID-19 cases worldwide
Center for Systems Science and Engineering (CSSE) at Johns Hopkins University (JHU)
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
ACAPS COVID-19: Government Measures Dataset
Shapefiles
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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