Man pages for epicentre-msf/covidestim
Estimates Of Epidemiological Parameters For COVID19

biAge-specific severity counts from Bi et al. 2020
compare_age_severityCompile age-specific estimates of Pr(hospitalizion|infection)...
compare_IFRCompile age-adjusted IFR estimates from different countries...
daviesAge-specific clinical fraction estimates from Davies et al....
get_age_popExtract age-specific population estimates for a given country...
get_est_brazeauGet estimates from Brazeau
get_est_daviesGet estimates from Davies
get_est_imperialGet estimates from Imperial
get_est_levinGet estimates from Levin
get_est_neherGet estimates from Neher
get_est_odriscollGet estimates from O'Driscoll
get_est_saljeGet estimates from Salje
get_est_vanzandvoortGet estimates from van Zandvoort
get_p_BrazeauEstimate Covid2019 outcome probabilities for a population...
get_p_ImperialEstimate Covid2019 outcome probabilities for a population...
get_p_LevinEstimate Covid2019 outcome probabilities for a population...
get_p_LSHTMEstimate Covid2019 outcome probabilities for a population...
get_p_NeherEstimate Covid2019 outcome probabilities for a population...
get_p_ODriscollEstimate Covid2019 outcome probabilities for a population...
get_pop_dataGet WPP population and age data
get_posterior_shenzhenGet posterior samples of Pr(outcome|age_group) based on data...
get_p_SaljeEstimate Covid2019 outcome probabilities for a population...
get_p_severe_JHUEstimate probability distribution of mild/moderate/severe...
get_severe_age_ShenzhenModel the probability of Covid19 outcome type (mild,...
imperialAge-specific severity estimates from Imperial
neherAge-specific severity estimates from Neher lab
saljeAge-specific severity estimates from Salje et al. 2020
shenzhen_samplesSamples of the posterior distribution of age-specific outcome...
vanzandvoortAge-specific severity estimates from van Zandvoort et al....
wpp_popPopulation estimates by country/region and 10-year age...
epicentre-msf/covidestim documentation built on Jan. 1, 2021, 1:06 a.m.