tests/testthat/_snaps/build_ord_obs.md

In epiforecasts/epinowcast: Flexible Hierarchical Nowcasting

build_ord_obs() output matches snapshot with day timesteps

Code
  result
Output
     reference_date report_date .group max_confirm location age_group confirm
  1:     2021-08-18  2021-08-22      1         223       DE       00+     223
  2:     2021-08-19  2021-08-22      1         202       DE       00+     202
  3:     2021-08-20  2021-08-22      1         171       DE       00+     171
  4:     2021-08-21  2021-08-22      1         112       DE       00+     112
  5:     2021-08-22  2021-08-22      1          45       DE       00+      45
     cum_prop_reported delay prop_reported
  1:                 1     4    0.01793722
  2:                 1     3    0.01980198
  3:                 1     2    0.07017544
  4:                 1     1    0.38392857
  5:                 1     0    1.00000000

build_ord_obs() output matches snapshot with week timesteps

Code
  result
Output
     reference_date report_date .group max_confirm confirm cum_prop_reported
  1:     2021-08-11  2021-09-08      1        1073    1073                 1
  2:     2021-08-18  2021-09-08      1        1733    1733                 1
  3:     2021-08-25  2021-09-08      1        2268    2268                 1
  4:     2021-09-01  2021-09-08      1        2388    2388                 1
  5:     2021-09-08  2021-09-08      1        1487    1487                 1
     delay
  1:     4
  2:     3
  3:     2
  4:     1
  5:     0

build_ord_obs() output matches snapshot when sampling from posterior

Code
  result
Output
         .draws reference_date report_date .group max_confirm location age_group
      1:      1     2021-08-09  2021-08-22      1          58       DE       00+
      2:      2     2021-08-09  2021-08-22      1          58       DE       00+
      3:      3     2021-08-09  2021-08-22      1          58       DE       00+
      4:      4     2021-08-09  2021-08-22      1          58       DE       00+
      5:      5     2021-08-09  2021-08-22      1          58       DE       00+
     ---                                                                        
  13996:    996     2021-08-22  2021-08-22      1          45       DE       00+
  13997:    997     2021-08-22  2021-08-22      1          45       DE       00+
  13998:    998     2021-08-22  2021-08-22      1          45       DE       00+
  13999:    999     2021-08-22  2021-08-22      1          45       DE       00+
  14000:   1000     2021-08-22  2021-08-22      1          45       DE       00+
         confirm cum_prop_reported delay prop_reported
      1:      58                 1    13             0
      2:      58                 1    13             0
      3:      58                 1    13             0
      4:      58                 1    13             0
      5:      58                 1    13             0
     ---                                              
  13996:      45                 1     0             1
  13997:      45                 1     0             1
  13998:      45                 1     0             1
  13999:      45                 1     0             1
  14000:      45                 1     0             1

epiforecasts/epinowcast documentation built on Feb. 3, 2025, 4:17 p.m.