tests/testthat/_snaps/enw_nowcast_samples.md
In epiforecasts/epinowcast: Flexible Hierarchical Nowcasting
enw_nowcast_samples can extract nowcast samples as expected
Code
round_numerics(enw_nowcast_samples(fit$fit[[1]], fit$latest[[1]], max_delay = fit$
max_delay)[1:10])
Output
reference_date report_date .group max_confirm location age_group confirm
1: 2021-08-03 2021-08-22 1 149 DE 00+ 149
2: 2021-08-03 2021-08-22 1 149 DE 00+ 149
3: 2021-08-03 2021-08-22 1 149 DE 00+ 149
4: 2021-08-03 2021-08-22 1 149 DE 00+ 149
5: 2021-08-03 2021-08-22 1 149 DE 00+ 149
6: 2021-08-03 2021-08-22 1 149 DE 00+ 149
7: 2021-08-03 2021-08-22 1 149 DE 00+ 149
8: 2021-08-03 2021-08-22 1 149 DE 00+ 149
9: 2021-08-03 2021-08-22 1 149 DE 00+ 149
10: 2021-08-03 2021-08-22 1 149 DE 00+ 149
cum_prop_reported delay prop_reported .chain .iteration .draw sample
1: 1 19 0 1 1 1 149
2: 1 19 0 1 2 2 149
3: 1 19 0 1 3 3 149
4: 1 19 0 1 4 4 149
5: 1 19 0 1 5 5 149
6: 1 19 0 1 6 6 149
7: 1 19 0 1 7 7 149
8: 1 19 0 1 8 8 149
9: 1 19 0 1 9 9 149
10: 1 19 0 1 10 10 149
enw_nowcast_samples can extract nowcast samples as expected when a delay larger than modelled is specified
Code
round_numerics(enw_nowcast_samples(fit$fit[[1]], fit$latest[[1]], max_delay = 22)[
c(1:10, 1001:1010, 2001:2010)])
Output
reference_date report_date .group max_confirm location age_group confirm
1: 2021-08-01 2021-08-20 1 77 DE 00+ 77
2: 2021-08-01 2021-08-20 1 77 DE 00+ 77
3: 2021-08-01 2021-08-20 1 77 DE 00+ 77
4: 2021-08-01 2021-08-20 1 77 DE 00+ 77
5: 2021-08-01 2021-08-20 1 77 DE 00+ 77
6: 2021-08-01 2021-08-20 1 77 DE 00+ 77
7: 2021-08-01 2021-08-20 1 77 DE 00+ 77
8: 2021-08-01 2021-08-20 1 77 DE 00+ 77
9: 2021-08-01 2021-08-20 1 77 DE 00+ 77
10: 2021-08-01 2021-08-20 1 77 DE 00+ 77
11: 2021-08-02 2021-08-21 1 59 DE 00+ 59
12: 2021-08-02 2021-08-21 1 59 DE 00+ 59
13: 2021-08-02 2021-08-21 1 59 DE 00+ 59
14: 2021-08-02 2021-08-21 1 59 DE 00+ 59
15: 2021-08-02 2021-08-21 1 59 DE 00+ 59
16: 2021-08-02 2021-08-21 1 59 DE 00+ 59
17: 2021-08-02 2021-08-21 1 59 DE 00+ 59
18: 2021-08-02 2021-08-21 1 59 DE 00+ 59
19: 2021-08-02 2021-08-21 1 59 DE 00+ 59
20: 2021-08-02 2021-08-21 1 59 DE 00+ 59
21: 2021-08-03 2021-08-22 1 149 DE 00+ 149
22: 2021-08-03 2021-08-22 1 149 DE 00+ 149
23: 2021-08-03 2021-08-22 1 149 DE 00+ 149
24: 2021-08-03 2021-08-22 1 149 DE 00+ 149
25: 2021-08-03 2021-08-22 1 149 DE 00+ 149
26: 2021-08-03 2021-08-22 1 149 DE 00+ 149
27: 2021-08-03 2021-08-22 1 149 DE 00+ 149
28: 2021-08-03 2021-08-22 1 149 DE 00+ 149
29: 2021-08-03 2021-08-22 1 149 DE 00+ 149
30: 2021-08-03 2021-08-22 1 149 DE 00+ 149
reference_date report_date .group max_confirm location age_group confirm
cum_prop_reported delay prop_reported .chain .iteration .draw sample
1: 1 19 0 NA NA 1 77
2: 1 19 0 NA NA 2 77
3: 1 19 0 NA NA 3 77
4: 1 19 0 NA NA 4 77
5: 1 19 0 NA NA 5 77
6: 1 19 0 NA NA 6 77
7: 1 19 0 NA NA 7 77
8: 1 19 0 NA NA 8 77
9: 1 19 0 NA NA 9 77
10: 1 19 0 NA NA 10 77
11: 1 19 0 NA NA 1 59
12: 1 19 0 NA NA 2 59
13: 1 19 0 NA NA 3 59
14: 1 19 0 NA NA 4 59
15: 1 19 0 NA NA 5 59
16: 1 19 0 NA NA 6 59
17: 1 19 0 NA NA 7 59
18: 1 19 0 NA NA 8 59
19: 1 19 0 NA NA 9 59
20: 1 19 0 NA NA 10 59
21: 1 19 0 1 1 1 149
22: 1 19 0 1 2 2 149
23: 1 19 0 1 3 3 149
24: 1 19 0 1 4 4 149
25: 1 19 0 1 5 5 149
26: 1 19 0 1 6 6 149
27: 1 19 0 1 7 7 149
28: 1 19 0 1 8 8 149
29: 1 19 0 1 9 9 149
30: 1 19 0 1 10 10 149
cum_prop_reported delay prop_reported .chain .iteration .draw sample
epiforecasts/epinowcast documentation built on Feb. 3, 2025, 4:17 p.m.
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enw_nowcast_samples can extract nowcast samples as expected
Code
round_numerics(enw_nowcast_samples(fit$fit[[1]], fit$latest[[1]], max_delay = fit$
max_delay)[1:10])
Output
reference_date report_date .group max_confirm location age_group confirm
1: 2021-08-03 2021-08-22 1 149 DE 00+ 149
2: 2021-08-03 2021-08-22 1 149 DE 00+ 149
3: 2021-08-03 2021-08-22 1 149 DE 00+ 149
4: 2021-08-03 2021-08-22 1 149 DE 00+ 149
5: 2021-08-03 2021-08-22 1 149 DE 00+ 149
6: 2021-08-03 2021-08-22 1 149 DE 00+ 149
7: 2021-08-03 2021-08-22 1 149 DE 00+ 149
8: 2021-08-03 2021-08-22 1 149 DE 00+ 149
9: 2021-08-03 2021-08-22 1 149 DE 00+ 149
10: 2021-08-03 2021-08-22 1 149 DE 00+ 149
cum_prop_reported delay prop_reported .chain .iteration .draw sample
1: 1 19 0 1 1 1 149
2: 1 19 0 1 2 2 149
3: 1 19 0 1 3 3 149
4: 1 19 0 1 4 4 149
5: 1 19 0 1 5 5 149
6: 1 19 0 1 6 6 149
7: 1 19 0 1 7 7 149
8: 1 19 0 1 8 8 149
9: 1 19 0 1 9 9 149
10: 1 19 0 1 10 10 149
enw_nowcast_samples can extract nowcast samples as expected when a delay larger than modelled is specified
Code
round_numerics(enw_nowcast_samples(fit$fit[[1]], fit$latest[[1]], max_delay = 22)[
c(1:10, 1001:1010, 2001:2010)])
Output
reference_date report_date .group max_confirm location age_group confirm
1: 2021-08-01 2021-08-20 1 77 DE 00+ 77
2: 2021-08-01 2021-08-20 1 77 DE 00+ 77
3: 2021-08-01 2021-08-20 1 77 DE 00+ 77
4: 2021-08-01 2021-08-20 1 77 DE 00+ 77
5: 2021-08-01 2021-08-20 1 77 DE 00+ 77
6: 2021-08-01 2021-08-20 1 77 DE 00+ 77
7: 2021-08-01 2021-08-20 1 77 DE 00+ 77
8: 2021-08-01 2021-08-20 1 77 DE 00+ 77
9: 2021-08-01 2021-08-20 1 77 DE 00+ 77
10: 2021-08-01 2021-08-20 1 77 DE 00+ 77
11: 2021-08-02 2021-08-21 1 59 DE 00+ 59
12: 2021-08-02 2021-08-21 1 59 DE 00+ 59
13: 2021-08-02 2021-08-21 1 59 DE 00+ 59
14: 2021-08-02 2021-08-21 1 59 DE 00+ 59
15: 2021-08-02 2021-08-21 1 59 DE 00+ 59
16: 2021-08-02 2021-08-21 1 59 DE 00+ 59
17: 2021-08-02 2021-08-21 1 59 DE 00+ 59
18: 2021-08-02 2021-08-21 1 59 DE 00+ 59
19: 2021-08-02 2021-08-21 1 59 DE 00+ 59
20: 2021-08-02 2021-08-21 1 59 DE 00+ 59
21: 2021-08-03 2021-08-22 1 149 DE 00+ 149
22: 2021-08-03 2021-08-22 1 149 DE 00+ 149
23: 2021-08-03 2021-08-22 1 149 DE 00+ 149
24: 2021-08-03 2021-08-22 1 149 DE 00+ 149
25: 2021-08-03 2021-08-22 1 149 DE 00+ 149
26: 2021-08-03 2021-08-22 1 149 DE 00+ 149
27: 2021-08-03 2021-08-22 1 149 DE 00+ 149
28: 2021-08-03 2021-08-22 1 149 DE 00+ 149
29: 2021-08-03 2021-08-22 1 149 DE 00+ 149
30: 2021-08-03 2021-08-22 1 149 DE 00+ 149
reference_date report_date .group max_confirm location age_group confirm
cum_prop_reported delay prop_reported .chain .iteration .draw sample
1: 1 19 0 NA NA 1 77
2: 1 19 0 NA NA 2 77
3: 1 19 0 NA NA 3 77
4: 1 19 0 NA NA 4 77
5: 1 19 0 NA NA 5 77
6: 1 19 0 NA NA 6 77
7: 1 19 0 NA NA 7 77
8: 1 19 0 NA NA 8 77
9: 1 19 0 NA NA 9 77
10: 1 19 0 NA NA 10 77
11: 1 19 0 NA NA 1 59
12: 1 19 0 NA NA 2 59
13: 1 19 0 NA NA 3 59
14: 1 19 0 NA NA 4 59
15: 1 19 0 NA NA 5 59
16: 1 19 0 NA NA 6 59
17: 1 19 0 NA NA 7 59
18: 1 19 0 NA NA 8 59
19: 1 19 0 NA NA 9 59
20: 1 19 0 NA NA 10 59
21: 1 19 0 1 1 1 149
22: 1 19 0 1 2 2 149
23: 1 19 0 1 3 3 149
24: 1 19 0 1 4 4 149
25: 1 19 0 1 5 5 149
26: 1 19 0 1 6 6 149
27: 1 19 0 1 7 7 149
28: 1 19 0 1 8 8 149
29: 1 19 0 1 9 9 149
30: 1 19 0 1 10 10 149
cum_prop_reported delay prop_reported .chain .iteration .draw sample
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