fv_model: Load and compile a strain model

In epiforecasts/forecast.vocs: Forecast Case and Sequence Notifications using Variant of Concern Strain Dynamics

Load and compile a strain model

Description

Load and compile a strain model

Usage

fv_model(model, include, strains = 2, compile = TRUE, verbose = FALSE, ...)

Arguments

model	A character string indicating the path to the model. If not supplied the package default model is used.
include	A character string specifying the path to any stan files to include in the model. If missing the package default is used.
strains	Integer number of strains. Defaults to 2. Current maximum is 2.
compile	Logical, defaults to TRUE. Should the model be loaded and compiled using cmdstanr::cmdstan_model().
verbose	Logical, defaults to TRUE. Should verbose messages be shown.
...	Additional arguments passed to cmdstanr::cmdstan_model().

Value

A cmdstanr model.

See Also

Functions used for modelling fv_as_data_list(), fv_inits(), fv_sample()

Examples

# one strain model
mod <- fv_model(strains = 1)

# two strain model
two_strain_mod <- fv_model(strains = 2)

epiforecasts/forecast.vocs documentation built on May 14, 2023, 2 p.m.