In epiforecasts/omicron-sgtf-forecast: Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy

knitr::opts_chunk$set(echo = FALSE)
library(here)

R

load-data.R: load case data (saved in "data/private"), and add row totals. Data are all test-positive cases in England by specimen date.

build-models.R: wrapper around forecast.vocs::forecast() to fit to multiple variant relationships and save output.

load-parameters.R: list model parameters to use in build_models(). Model parameters are:

source(here("utils", "load-parameters.R"))
load_parameters()

epiforecasts/omicron-sgtf-forecast documentation built on Jan. 21, 2022, 9:19 p.m.