data/README.md

In epiforecasts/omicron-sgtf-forecast: Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy

Data

Processed input data and model outputs stored in dated sub-folders.

Folder | Purpose ---|--- estimates/sgtf | Posterior estimates, fit diagnostics, and model comparison metrics for models estimating the transmission advantage of Omicron vs non-Omicron using SGTF status in dated sub-folders. These estimates can be most easily accessed using the tooling provided in R/load-local-data.R. estimates/bias | Posterior estimates, and fit diagnostic for models estimating the potential sampling bias for S-gene status in dated sub-folders. These estimates can be most easily accessed using the tooling provided in R/load-local-data.R/. [public](public/) | SGTF and reported cases data by specimen date downloaded from public sources saved in dated files usingscripts/update-regional-data.R`.

epiforecasts/omicron-sgtf-forecast documentation built on Jan. 21, 2022, 9:19 p.m.