Man pages for episphere/biowR
Helper functions for Biowulf Cluster
| clean_user_dir | Empty the biowR cache |
| concat_mangled_files | Concatenates files that would have the name if they were not... |
| ensure_absolute_path | Ensure that the Path passed in is an absolute path |
| getStartAndEndJobs | calculates the number of files to run on a hyperthread n_jobs... |
| mangle_filename | Mangles the filename to prevent name collision |
| pipe | Pipe operator |
| runggir | Run GGIR on the NIH biowulf. |
| scratch | Working with local scratch space |
| stage_filelist | Stage files from a list of files |
| stage_files | Stage files from one dir to another. |
| stage_part1_results | Stage results from GGIR part 1 |
| unstage_all | Copy results from the staging back to the results directory |
| write_R_script | Write the R script for running GGIR |
| write_swarmfile | Prepares the swarmfile/script file for Stage 1 of the GGIR... |
