unstage_all: Copy results from the staging back to the results directory

In episphere/biowR: Helper functions for Biowulf Cluster

Copy results from the staging back to the results directory

Description

The way we run GGIR steps 2-5 on biowulf is to copy a set of results from step 1 to a local staging scratch directory on one of the nodes. The scratch directory is only available on the compute node. Then steps 2-5 are run.

This function takes the results from steps 2-5 and returns it to the central results directory, which is a networked disk.

The output directory is named output_studyname.

Usage

unstage_all(stage_output, results_output)

Arguments

stage_output	the output directory on the stage disk
results_output	the central output director

Value

a tibble with columns (file,name,relpath,mangle,ok)

file	name	relpath	mangle	ok
relative path of the files	basename of the file.	relative name of the files' directory	Was the file mangled?	Did the file copies ok?

episphere/biowR documentation built on Dec. 6, 2023, 1:44 a.m.