tests/testthat/_snaps/prepare_data.md

In epiverse-trace/datadelay: Estimate Disease Severity and Case Ascertainment

Prepare <incidence2> data, basic expectations

Code
  head(prepare_data(covid_uk_incidence, cases_variable = "cases_new",
    deaths_variable = "deaths_new", fill_NA = FALSE))
Output
          date cases deaths
  1 2020-01-30    NA     NA
  2 2020-01-31    NA     NA
  3 2020-02-01    NA     NA
  4 2020-02-02    NA     NA
  5 2020-02-03    NA     NA
  6 2020-02-04    NA     NA

Code
  tail(data)
Output
            date cases deaths
  485 2021-05-28  6205      6
  486 2021-05-29  5146      5
  487 2021-05-30  5395      8
  488 2021-05-31  6251      6
  489 2021-06-01  3346      4
  490 2021-06-02     0      0

Prepare grouped <incidence2> data

Code
  head(prepare_data(data, cases_variable = "cases_new", deaths_variable = "deaths_new",
    fill_NA = FALSE))
Output
          date          region cases deaths
  1 2020-01-30   East Midlands    NA     NA
  2 2020-01-30 East of England    NA     NA
  3 2020-01-30         England     2     NA
  4 2020-01-30          London    NA     NA
  5 2020-01-30      North East    NA     NA
  6 2020-01-30      North West    NA     NA

epiverse-trace/datadelay documentation built on March 6, 2025, 12:55 a.m.