EpivizData-class: Data container for epiviz data server

In epiviz/epivizrData: Data Management API for epiviz interactive visualization app

Description

Data container for epiviz data server

Methods

get_default_chart_type()

Get name of default chart type for this data type

get_id()

Get id provided by manager EpivizDataMgr-class

get_measurements()

Get description of measurements served by this object

get_name()

Get datasource name, usually set by manager EpivizDataMgr-class

get_rows(query, metadata, useOffset = FALSE)

Get genomic interval information overlapping query <GenomicRanges> region

get_source_name()

Get original datasource name provided by manager EpivizDataMgr-class

get_values(query, measurement, round = TRUE)

Get measurement values for features overlapping query region <GenomicRanges

parse_measurement(ms_id = NULL)

Parse a measurement description for data served by this object

set_id(id)

Set id, used by manager EpivizDataMgr-class

set_limits(ylim)

Set plotting limits for continuous data

set_mgr(mgr)

Set data manager, EpivizDataMgr-class

set_name(name)

Set datasource name, usually set by manager EpivizDataMgr-class

set_source_name(source_name)

Set original datasource name, used by manager EpivizDataMgr-class

toMySQL(connection, db_name, annotation = NULL, batch = 50, index = TRUE)

Send EpivizData to a MySQL Database

connection

DBIConnection to a database

db_name

Name of MySQL database

annotation

Annotation for index table

batch

Batch size for data sent to the MySQL database

index

Insert into respective index table

update(new_object, send_request = TRUE)

Update underlying data object with new object

epiviz/epivizrData documentation built on Oct. 9, 2021, 12:19 a.m.