Files in ericmkeen/shipstrike
Utilities for spatially- and temporally-explicit predictions of whale-ship collisions
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/.DS_Store
R/ais_table.R
R/collision_curve.R
R/data.R
R/ellipse.R
R/encounter_diagnostics.R
R/encounter_rate.R
R/fin_params.R
R/gather_outcomes.R
R/get_seafloor.R
R/humpback_params.R
R/lethality_curve.R
R/make_grid.R
R/mitigate.R
R/mitigate_loop.R
R/outcome_chances.R
R/outcome_histograms.R
R/outcome_map.R
R/outcome_melt.R
R/outcome_predict.R
R/outcome_shares.R
R/outcome_table.R
R/outcome_validation.R
R/pbr.R
R/simulate_vessel.R
R/simulate_whale.R
R/summarize_grid.R
R/transit_ellipses.R
R/vessel_grid.R
R/vessel_sun_angle.R
README.md
data-raw/.DS_Store
data-raw/ais-2018.csv
data-raw/cedar_lng_traffic_8_14knot.R
data-raw/collision_fig.RData
data-raw/fin_whale_habitat.R
data-raw/grid-kfs-1km.csv
data-raw/grid.R
data-raw/lethal_fig.RData
data-raw/lng_canada_traffic_8_14knots.R
data-raw/p_avoidance.RData
data-raw/p_lethal.RData
data-raw/p_surface.R
data-raw/p_surface.RData
data-raw/prep-ais-2014-2018.R
data-raw/prep-ais-2019.R
data-raw/prep_p_avoidance.R
data-raw/prep_p_covered.R
data-raw/prep_p_lethal.R
data-raw/tanker_route.R
data-raw/tanker_sim.R
data-raw/vessels_2014.RData
data-raw/vessels_2015.RData
data-raw/vessels_2018.RData
data-raw/vessels_2019.RData
data-raw/vessels_cedar_lng_8_14knots.RData
data-raw/vessels_lng_canada.RData
data-raw/vessels_lng_canada_8_14knots.RData
data/.DS_Store
data/ais.rda
data/ais_2014.rda
data/ais_2015.rda
data/ais_2018.rda
data/ais_2019.rda
data/cedar_lng.rda
data/fin_whale_habitat.rda
data/grid_kfs.rda
data/lng_canada.rda
data/p_collision.rda
data/p_covered.rda
data/p_lethal.rda
data/p_lethality.rda
data/p_surface.rda
data/tanker_route.rda
data/tankers2030.rda
docs/.DS_Store
docs/_config.yml
docs/index.Rmd
docs/index.html
docs/index_v1.html
docs/tests/p_encounter.RData
man/ais.Rd
man/ais_table.Rd
man/collision_curve.Rd
man/ellipse.Rd
man/encounter_diagnostics.Rd
man/encounter_rate.Rd
man/fin_params.Rd
man/fin_whale_habitat.Rd
man/gather_outcomes.Rd
man/get_seafloor.Rd
man/grid_kfs.Rd
man/humpback_params.Rd
man/lethality_curve.Rd
man/make_grid.Rd
man/mitigate.Rd
man/mitigate_loop.Rd
man/outcome_chances.Rd
man/outcome_histograms.Rd
man/outcome_map.Rd
man/outcome_melt.Rd
man/outcome_predict.Rd
man/outcome_shares.Rd
man/outcome_table.Rd
man/outcome_validation.Rd
man/pbr.Rd
man/simulate_vessel.Rd
man/simulate_whale.Rd
man/summarize_grid.Rd
man/tanker_route.Rd
man/tankers2030.Rd
man/transit_ellipses.Rd
man/vessel_grid.Rd
man/vessel_sun_angle.Rd
map_base.png
map_lng.png
setup.R
shipstrike.Rproj
tests/.DS_Store
tests/ais/.DS_Store
tests/ais/AIS_2019_cleaned.RData
tests/ais/AIS_2019_grouped.RData
tests/ais/ais-rate-of-increase.R
tests/ais/vessel_trends.RData
tests/ais/vessel_trends_obs.RData
tests/figs/.DS_Store
tests/figs/ais/.DS_Store
tests/figs/ais/Fig-AIS-2019.pdf
tests/figs/ais/Fig-AIS-2019.pptx
tests/figs/ais/monthly-channels.png
tests/figs/ais/monthly-vessels.png
tests/figs/avoid-lethal/Fig-avoid-lethal.png
tests/figs/avoid-lethal/avoid-lethal.R
tests/figs/lta/LTA.pdf
tests/figs/lta/LTA.png
tests/figs/lta/LTA.pptx
tests/figs/lta/effort.pdf
tests/figs/lta/fw.pdf
tests/figs/lta/hw.pdf
tests/figs/lta/key.pdf
tests/figs/maps/.DS_Store
tests/figs/maps/Fig-bathy.png
tests/figs/maps/Fig-bathy.pptx
tests/figs/maps/Fig-density.pdf
tests/figs/maps/Fig-density.pptx
tests/figs/maps/Fin whale density.pdf
tests/figs/maps/Humpback whale - August.pdf
tests/figs/maps/Humpback whale - July.pdf
tests/figs/maps/Humpback whale - June.pdf
tests/figs/maps/Humpback whale - September.pdf
tests/figs/maps/Humpback whale density.pdf
tests/figs/maps/Seafloor depth.pdf
tests/figs/maps/Seafloor range.pdf
tests/figs/maps/Vessel transits (2019).pdf
tests/figs/maps/maps.R
tests/figs/mitigation/Fig-miitgation.pdf
tests/figs/mitigation/Fig-miitgation.pptx
tests/figs/mitigation/mitigation.pdf
tests/figs/seasonal.pdf
tests/figs/seasonal.tiff
tests/figs/study_araa/Fig-map.pdf
tests/figs/study_araa/Fig-map.pptx
tests/fw/.DS_Store
tests/fw/01_p_whale.R
tests/fw/02_prep_seasonal_regression.R
tests/fw/03_analysis.R
tests/fw/04_mitigation.R
tests/fw/ais_2015/outcomes.RData
tests/fw/ais_2015/outcomes_grid.RData
tests/fw/ais_2015/p_encounter.RData
tests/fw/ais_2019/.DS_Store
tests/fw/ais_2019/outcomes.RData
tests/fw/ais_2019/outcomes_grid.RData
tests/fw/ais_2019/p_encounter.RData
tests/fw/ais_2030/.DS_Store
tests/fw/ais_2030/outcomes.RData
tests/fw/ais_2030/outcomes_grid.RData
tests/fw/cedar_lng/.DS_Store
tests/fw/cedar_lng/outcomes.RData
tests/fw/cedar_lng/outcomes_grid.RData
tests/fw/cedar_lng/p_encounter.RData
tests/fw/ds-models.RData
tests/fw/dsm-bootstraps.RData
tests/fw/dsm-estimate.RData
tests/fw/dsm-model.RData
tests/fw/lng_canada/.DS_Store
tests/fw/lng_canada/outcomes.RData
tests/fw/lng_canada/outcomes_grid.RData
tests/fw/lng_canada/p_encounter.RData
tests/fw/mitigation/1a/cedar_lng/outcomes.RData
tests/fw/mitigation/1a/cedar_lng/outcomes_grid.RData
tests/fw/mitigation/1a/cedar_lng/p_encounter.RData
tests/fw/mitigation/1a/lng_canada/outcomes.RData
tests/fw/mitigation/1a/lng_canada/outcomes_grid.RData
tests/fw/mitigation/1a/lng_canada/p_encounter.RData
tests/fw/mitigation/1b/.DS_Store
tests/fw/mitigation/1b/ais_2030/outcomes.RData
tests/fw/mitigation/1b/ais_2030/outcomes_grid.RData
tests/fw/mitigation/1b/ais_2030/p_encounter.RData
tests/fw/mitigation/2a/cedar_lng/outcomes.RData
tests/fw/mitigation/2a/cedar_lng/outcomes_grid.RData
tests/fw/mitigation/2a/lng_canada/outcomes.RData
tests/fw/mitigation/2a/lng_canada/outcomes_grid.RData
tests/fw/mitigation/2b/ais_2030/outcomes.RData
tests/fw/mitigation/2b/ais_2030/outcomes_grid.RData
tests/fw/mitigation/3a/mitigation.RData
tests/fw/mitigation/3b/mitigation.RData
tests/fw/mitigation/3c/mitigation.RData
tests/fw/mitigation/4a/mitigation.RData
tests/fw/mitigation/4b/mitigation.RData
tests/fw/mitigation/4c/mitigation.RData
tests/fw/mitigation/mitigation.RData
tests/fw/p_whale.RData
tests/fw/results.RData
tests/fw/seasonal_posterior.RData
tests/hw/.DS_Store
tests/hw/01_p_whale.R
tests/hw/02_prep_seasonal_regression.R
tests/hw/03_analysis.R
tests/hw/06_mitigation.R
tests/hw/ais_2015/outcomes.RData
tests/hw/ais_2015/outcomes_grid.RData
tests/hw/ais_2015/p_encounter.RData
tests/hw/ais_2019/.DS_Store
tests/hw/ais_2019/outcomes.RData
tests/hw/ais_2019/outcomes_grid.RData
tests/hw/ais_2019/p_encounter.RData
tests/hw/ais_2030/.DS_Store
tests/hw/ais_2030/outcomes.RData
tests/hw/ais_2030/outcomes_grid.RData
tests/hw/cedar_lng/.DS_Store
tests/hw/cedar_lng/outcomes.RData
tests/hw/cedar_lng/outcomes_grid.RData
tests/hw/cedar_lng/p_encounter.RData
tests/hw/ds-models.RData
tests/hw/dsm-estimate.RData
tests/hw/dsm-model.RData
tests/hw/hw_lengths.RData
tests/hw/lng_canada/.DS_Store
tests/hw/lng_canada/outcomes.RData
tests/hw/lng_canada/outcomes_grid.RData
tests/hw/lng_canada/p_encounter.RData
tests/hw/mitigation/.DS_Store
tests/hw/mitigation/1a/.DS_Store
tests/hw/mitigation/1a/cedar_lng/outcomes.RData
tests/hw/mitigation/1a/cedar_lng/outcomes_grid.RData
tests/hw/mitigation/1a/cedar_lng/p_encounter.RData
tests/hw/mitigation/1a/lng_canada/outcomes.RData
tests/hw/mitigation/1a/lng_canada/outcomes_grid.RData
tests/hw/mitigation/1a/lng_canada/p_encounter.RData
tests/hw/mitigation/1b/.DS_Store
tests/hw/mitigation/1b/ais_2030/outcomes.RData
tests/hw/mitigation/1b/ais_2030/outcomes_grid.RData
tests/hw/mitigation/1b/ais_2030/p_encounter.RData
tests/hw/mitigation/2a/.DS_Store
tests/hw/mitigation/2a/cedar_lng/outcomes.RData
tests/hw/mitigation/2a/cedar_lng/outcomes_grid.RData
tests/hw/mitigation/2a/lng_canada/outcomes.RData
tests/hw/mitigation/2a/lng_canada/outcomes_grid.RData
tests/hw/mitigation/2b/.DS_Store
tests/hw/mitigation/2b/ais_2030/outcomes.RData
tests/hw/mitigation/2b/ais_2030/outcomes_grid.RData
tests/hw/mitigation/3a/mitigation.RData
tests/hw/mitigation/3b/mitigation.RData
tests/hw/mitigation/3c/mitigation.RData
tests/hw/mitigation/4a/mitigation.RData
tests/hw/mitigation/4b/mitigation.RData
tests/hw/mitigation/4c/mitigation.RData
tests/hw/mitigation/mitigation.RData
tests/hw/results-backup.RData
tests/hw/results.RData
tests/hw/uas/LIDAR/20190606_02_LOG_0001.CSV
tests/hw/uas/LIDAR/20190611_01_LOG_0002.CSV
tests/hw/uas/LIDAR/20190828_LOG_0001.CSV
tests/hw/uas/LIDAR/20190829_LOG_0002.CSV
tests/hw/uas/LIDAR/20190831_LOG_0005.CSV
tests/hw/uas/LIDAR/20190903_LOG_0008.CSV
tests/hw/uas/LIDAR/20190905_LOG_0009.CSV
tests/hw/uas/LIDAR/20190905_LOG_0010.CSV
tests/hw/uas/LIDAR/20190905_LOG_0011.CSV
tests/hw/uas/LIDAR/20190905_LOG_0012.CSV
tests/hw/uas/LIDAR/20190907_LOG_0000.CSV
tests/hw/uas/LIDAR/20190907_LOG_0001.CSV
tests/hw/uas/LIDAR/20190907_LOG_0002.CSV
tests/hw/uas/LIDAR/20190908_LOG_0000_Group1and2.CSV
tests/hw/uas/LIDAR/20190908_LOG_0000_Group3.CSV
tests/hw/uas/LIDAR/20190909_LOG_0003_Group1and2.CSV
tests/hw/uas/LIDAR/20190910_LOG_0000.CSV
tests/hw/uas/LIDAR/20190910_LOG_0001.CSV
tests/hw/uas/LIDAR/20190910_LOG_0002.CSV
tests/hw/uas/LIDAR/20190911_LOG_0003.CSV
tests/hw/uas/LIDAR/20190911_LOG_0004.CSV
tests/hw/uas/LIDAR/20190911_LOG_0005.CSV
tests/hw/uas/LIDAR/20191004_LOG_0008.CSV
tests/hw/uas/LIDAR/Icon
tests/hw/uas/hw_lidar_results.RData
tests/hw/uas/lidar_analysis.R
tests/psurface/tag_data.RData
tests/psurface/tags.R
tests/r1/r1.R
tests/seasonal/.DS_Store
tests/seasonal/encounter_rates.csv
tests/seasonal/fin/.DS_Store
tests/seasonal/fin/2017/mm.csv
tests/seasonal/fin/2017/scans.csv
tests/seasonal/fin/2017/sea.csv
tests/seasonal/fin/2018/mm.csv
tests/seasonal/fin/2018/scans.csv
tests/seasonal/fin/2018/sea.csv
tests/seasonal/fin/2019/mm.csv
tests/seasonal/fin/2019/scans.csv
tests/seasonal/fin/2019/sea.csv
tests/seasonal/fin/2020/mm.csv
tests/seasonal/fin/2020/scans.csv
tests/seasonal/fin/2020/sea.csv
tests/seasonal/fin/2021/mm.csv
tests/seasonal/fin/2021/scans.csv
tests/seasonal/fin/2021/sea.csv
tests/seasonal/prep_seasonal_data.R
tests/supp_mat/.DS_Store
tests/supp_mat/boxhist.R
tests/supp_mat/d_fw.RData
tests/supp_mat/d_hw.RData
tests/supp_mat/fw_mit.RData
tests/supp_mat/gam_smooths.pdf
tests/supp_mat/gam_smooths.png
tests/supp_mat/gam_smooths.pptx
tests/supp_mat/hw_mit.RData
tests/supp_mat/lng_fleet.png
tests/supp_mat/map-cooccurrences.png
tests/supp_mat/map-mortalities.pdf
tests/supp_mat/map-mortalities.png
tests/supp_mat/maps-cooccurrences.pdf
tests/supp_mat/mitigation.pdf
tests/supp_mat/old versions/supp_mat.Rmd
tests/supp_mat/shares_fw.RData
tests/supp_mat/shares_fw_180m.RData
tests/supp_mat/shares_hw.RData
tests/supp_mat/shares_hw_180m.RData
tests/supp_mat/supp_mat.Rmd
tests/supp_mat/supp_mat.html
tests/supp_mat/supp_mat.pdf
tests/supp_mat/supp_mat_0515.pdf
tests/supp_mat/supp_mat_0915.pdf
tests/supp_mat/supp_mat_1027.html
tests/supp_mat/supp_mat_new.pdf
