Man pages for ericwatt/toxboot
Bootstrap Methods for 'ToxCast' High Throughput Screening Data
| dat1000 | Bootstrap results for m4id = 9057756 using 1000 replicates |
| dat10000 | Bootstrap results for m4id = 9057756 using 10000 replicates |
| erl3data | Concentration response data from 200 ER assay curves |
| erl5data | Fit parameters, model selection, and hit calls from 200 ER... |
| gnls_curve | Gain Loss Curve. |
| hill_curve | Hill Curve. |
| listTonumeric | Convert x to numeric if x is a list. |
| nullToNA | Replace NULL values with NA. |
| toxboot | Main function to sample, fit, and write results to mongoDB |
| toxboot_config_funcs | Functions for configuring the toxboot package |
| toxbootConnectMongo | Setup connection to toxboot MongoDB |
| toxboot-defunct | DEFUNCT |
| toxbootGetMongoFields | Query mongoDB and get requested fields |
| toxbootGetMySQLFields | Function to query toxboot results from MySQL |
| toxbootHitParamCI | Performs Hit Call and Model Winner Selection on Bootstrap... |
| toxbootmc | Filter and multicore wrapper for 'toxboot' |
| toxbootMongoCount | Get number of documents that match query. |
| toxbootMysqlCreateTable | Function to create properly formatted toxboot table in MySQL |
| toxbootProjectionBuild | Build projection for toxboot MongoDB |
| toxbootQueryBuild | Build query for toxboot MongoDB |
| toxbootQueryToxCast | Query ToxCast and format data to pass to 'toxboot' |
| toxbootReplicates | Generates bootstrap samples of dose response data |
| toxbootWriteMongo | Write bootstrap results to mongoDB |
