val_TDL_Licor_variables: Assign TDL and Licor values to val variable names, raw and...

In erikerhardt/isogasex: Isotopic gas exchange using TDL and Licor input. Updated version of package tdllicor

Description

Function to assign TDL and Licor values to variable names, summaries and some smart way for individual observations (later for NPBS). If the variable has values, use those, if not then populate with NAs.

Usage

val_TDL_Licor_variables(TDL, Licor, TDL_cycle, val, sw)

Arguments

TDL	xxxPARAMxxx
Licor	xxxPARAMxxx
TDL_cycle	xxxPARAMxxx
val	xxxPARAMxxx
sw	xxxPARAMxxx

Details

These are the columns expected from the Licor and TDL. Any columns with headers not listed here will not be used.

EXPECTED column names for Licor:

(in isogasex)     (column from Licor)
Obs               Obs
HHMMSS            HHMMSS
FTime             FTime
A                 Photo
E                 Trmmol
temp_air          Tair
temp_leaf         Tleaf
temp_block        TBlk
Ce                CO2R
Co                CO2S
xin               H2OR
xout              H2OS
rh_ref            RH_R
rh_sam            RH_S
uin               Flow
par_int           PARi
par_ext           PARo
Atm_press         Press
CsMch             CsMch
HsMch             HsMch
StableF           StableF
Status            Status
gsc               Cond
Ci                Ci
VPD               VpdL
La                Area
StmRat            StmRat
gbw               BLCond
VpdA              VpdA
Ci_Ca             Ci_Ca
pi                Ci_Pa
uc_20_mV          uc_20_mV
uc_21_mV          uc_21_mV
U_S               X.U.S.
Trans             Trans
CndCO2            CndCO2
Ref_mV            Ref_mV
xTemp1            xTemp1
xTemp2            xTemp2
TChamAir          TChamAir

EXPECTED column names for TDL:

(in isogasex)       (column from TDL)
TIMESTAMP           TIMESTAMP
RECORD              RECORD
PrevSite            PrevSite
SiteOutput          SiteOutput
StartSeqFlag        StartSeqFlag
SeqActiveFlag       SeqActiveFlag
SiteCount           SiteCount
conc12CO2           ConcA
conc13CO2           ConcB
ConcC               ConcC
TGAStatus           TGAStatus
TGApressure         TGApressure
MassFlow1           MassFlow1
Pressure1           Pressure1
MassFlow2           MassFlow2
Pressure2           Pressure2
PressureProMan      PressureProMan

Conventions, put everything in val. Observed values from TDL or Licor prefix: val$obs$*

Summarized values from TDL or Licor prefix: val$sum$*

Value

val xxxRETURNxxx

erikerhardt/isogasex documentation built on July 16, 2019, 5:25 a.m.