| base_plot | plot to compare snppit runs | 
| coho_genotypes | Genotypes of 1984 coho salmon over seven years | 
| coho_metadata | Sex, year, and spawner group of 1984 coho salmon over seven... | 
| compile_pedigree_sex_issues | Compile the connected components of parent pairs with sex... | 
| count_discrepancies | from pairs of duplicately genotyped samples, prepare a report... | 
| find_matching_samples | Find matching samples to a single representative | 
| genos2rubias | convert long format genotypes to rubias format | 
| partition_two_snppit_results | Partition the results of two SNPPIT runs by comparisons of... | 
| prepare_snppit_infile | prepare long-format genotypes for snppit | 
| prep_to_compare_snppit_runs | Prepare SNPPIT runs to compare them | 
| reformat_no_sex_or_date_results | After slurping in a SNPPIT run done without sex or date... | 
| reorganize_matching_samples | Relabel matching genotypes to a single ID and reorganize... | 
| run_snppit | prepare data for SNPPIT and run it | 
| slurp_snppit | Read the output from snppit into a format useful for... | 
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