Man pages for eriqande/gdropR
Simulate Linked Markers Down Pedigrees
| add_explicit_founder_parents | explicitly add parents of 0 to the founders of a pedigree |
| add_pedigree_sex_column | given a pedigree as Kid Pa Ma, this adds a column called Sex |
| biallelic_geno_error | Simulate genotyping error on biallelic markers |
| chinook_chromosomes | Lengths of the 34 named Chinook salmon chromosomes |
| create_founders | quick function to create Nm males and Nf female founders.... |
| expand_offspring | simple function to expand pairs into named individuals with... |
| FourGen_555_pedigree | A four generation pedigree simulated to be acyclic |
| id_prepend | prepend an ID to a mendel input or output file |
| iteratively_expand_conn_comps | function that iteratively expands the connected component... |
| long_markers | A tibble of a bunch of multiallelic markers with allele... |
| make_pairs | Determine pairs. Given the individuals in a given year... |
| markers2mendel_def_lines | convert a long-format data frame of loci into a vector of... |
| markers2mendel_map_lines | create a vector of Mendel formatted map file strings |
| mendelBin | Given the operating system, check for mendel program in the... |
| mendel_control_list | return a list of values for a Mendel definitions file for... |
| num_offspring | this little function takes the tibble that comes out of... |
| pedigree2mendel_ped_file | for making a pedigree file with no observed genotypes on it |
| pedigrees | A list of some very small pedigrees used in CKMRsim |
| pipe | Pipe operator |
| reindex_markers | re-index loci and or alleles given a data frame of markers |
| run_mendel | Run the mendel binary in directory Dir using control file... |
| set_init_cc_members | set the initial connected component members of all newborns.... |
| simulate_acyclic_pedigree | Simulate an acyclic pedigree |
| simulate_linked_genotypes | simulate genotype-pairs from linked markers using Mendel |
| sprinkle_markers_into_genome | Randomly distribute markers along the chromosomes of a genome |
| translate_tib_to_list_element | this function takes the tibble coming out of iteratively... |
| update_conn_comps_after_pair_union | update the conn-comps of two mates and all the rest. This... |
| write_all_mendel_files | Write all necessary files for Mendel to do a gene-dropping... |
