read_macs_output: read ms-formatted MaCS output into a matrix of haplotypes.
In eriqande/gids: Genomic Landscape of Divergence Simulation
read_macs_output R Documentation
read ms-formatted MaCS output into a matrix of haplotypes.
Description
This is implemented in Rcpp for speed. It is designed to read a single replicate coalescent
simulation in macs' msformatter format and convert the 0/1's to 1/2's and return in a big integer
matrix of haplotypes that can then be put together as desired later. (i.e. different pops and into
different diploid individuals)
Usage
read_macs_output(Input)
Arguments
Input
the path to the mac | msformatter output file to read in. Note that
tilde expansion will not occur on this path
eriqande/gids documentation built on Jan. 5, 2024, 12:31 a.m.
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| read_macs_output | R Documentation |
read ms-formatted MaCS output into a matrix of haplotypes.
Description
This is implemented in Rcpp for speed. It is designed to read a single replicate coalescent simulation in macs' msformatter format and convert the 0/1's to 1/2's and return in a big integer matrix of haplotypes that can then be put together as desired later. (i.e. different pops and into different diploid individuals)
Usage
read_macs_output(Input)
Arguments
Input |
the path to the mac | msformatter output file to read in. Note that tilde expansion will not occur on this path |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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