gscramble2plink: Write 'gscramble' I_meta, M_meta, and Geno to a plink file

In eriqande/gscramble: Simulating Admixed Genotypes Without Replacement

Write 'gscramble' I_meta, M_meta, and Geno to a plink file

Description

Writes genetic and individual information in 'gscramble's I_meta, M_meta, and Geno like objects into a uncompressed plink .ped and .map files.

Usage

gscramble2plink(I_meta, M_meta, Geno, prefix = tempfile())

Arguments

I_meta	a tibble of individual meta data with at least the columns of group and indiv.
M_meta	a tibble of marker meta data with at least the columns of chrom, pos, and variant_id.
Geno	a character matrix of genotypes. Num-indivs rows and num-markers * 2 columns, with missing denoted denoted by NA.
prefix	the file path and prefix into which to write out the files

Value

Returns TRUE if successful.

Examples

gscramble2plink(I_meta, M_meta, Geno)

eriqande/gscramble documentation built on March 5, 2024, 4:22 p.m.