Man pages for esqLABS/esqlabsR
esqLABS utilities package
| applyIndividualParameters | Apply an individual to the simulation. For human species,... |
| calculateMeanDataSet | Calculate mean and standard deviation for the yValues of the... |
| col2hsv | Returns the HSV values for a given R color name |
| compareSimulations | Compare two simulations |
| compareWithNA | Compare values including 'NA' |
| createDataCombinedFromExcel | Generate DataCombined objects as defined in excel file |
| createDefaultProjectConfiguration | Create a default 'ProjectConfiguration' |
| createEsqlabsExportConfiguration | Create an instance of 'ExportConfiguration' R6 class |
| createEsqlabsPlotConfiguration | Create an instance of 'DefaultPlotConfiguration' R6 class |
| createEsqlabsPlotGridConfiguration | Create an instance of 'PlotGridConfiguration' R6 class |
| createPlotsFromExcel | Generate plots as defined in excel file... |
| createProjectConfiguration | Create a 'ProjectConfiguration' |
| createScenarios | Create 'Scenario' objects from 'ScenarioConfiguration'... |
| Distributions | Supported distributions for sampling |
| dot-createConfigurationFromRow | Create a plotConfiguration or exportConfiguration objects... |
| dot-readOntongeniesFromXLS | Read ontogeny mapping from excel |
| dot-validateClassHasField | Check if the 'object' contains active binding with the name... |
| dot-validateDataCombinedFromExcel | Validate and process the 'DataCombined' sheet |
| dot-validateExportConfigurationsFromExcel | Validate and process the 'exportConfiguration' sheet |
| dot-validateParametersStructure | Validate parameter list structure |
| dot-validatePlotConfigurationFromExcel | Validate and process the 'plotConfiguration' sheet |
| dot-validatePlotGridsFromExcel | Validate and process the 'plotGrids' sheet |
| dot-validateScenarioConfigurations | Validate 'ScenarioConfiguration' objects |
| enumPutList | Add a new key-value pairs to an enum, where the value is a... |
| esqlabsColors | esqLABS color palette |
| esqlabsRSettingNames | Names of the settings stored in esqlabsEnv Can be used with... |
| exampleDirectory | Get path to esqlabsR examples |
| exampleProjectConfigurationPath | Get the path to example ProjectConfiguration.xlsx |
| executeInParallel | Parallelize the execution of a function over a list of... |
| ExportConfiguration | ExportConfiguration |
| exportParametersToXLS | Export simulation parameters to excel |
| extendParameterStructure | Extend parameters structure with new entries |
| extendPopulationByUserDefinedParams | Add user defined variability on parameters to a population. |
| extendPopulationFromXLS | Add user defined variability on parameters to a population... |
| GenderInt | Possible gender entries as integer values |
| geomean | Calculate geometric mean of a numeric vector |
| geosd | Calculate geometric standard deviation of a numeric vector |
| getAllApplicationParameters | Get parameters of applications in the simulation |
| getEsqlabsRSetting | Get the value of a global esqlabsR setting. |
| getIndexClosestToValue | Find value in an array |
| getMoleculeNameFromQuantity | Get the name of the molecule from a quantity |
| initializeSimulation | Load a simulation and apply a set of parameters. |
| initProject | Initialize esqlabsR Project Folders and required Files |
| isParametersEqual | Check if two parameters are equal with respect to certain... |
| isTableFormulasEqual | Check if two table formulas are equal. |
| LLOQMode | Possible entries for the 'lloqMode' argument of... |
| loadObservedData | Load data from excel |
| loadObservedDataFromPKML | Load data from pkml |
| loadScenarioResults | Load simulated scenarios from csv and pkml. |
| pathFromClipboard | Convert Windows filepaths for R |
| ProjectConfiguration | ProjectConfiguration |
| readExcel | Read XLSX files using 'readxl::read_excel' with suppressed... |
| readIndividualCharacteristicsFromXLS | Read individual characteristics from file |
| readParametersFromXLS | Read parameter values from a structured Excel file. Each... |
| readPopulationCharacteristicsFromXLS | Read an excel file containing information about population... |
| readScenarioConfigurationFromExcel | Read scenario definition(s) from excel file |
| reexports | Objects exported from other packages |
| removeFromList | Remove an entry from a list |
| runScenarios | Run a set of scenarios. |
| sampleRandomValue | Sample a random value from a distribution |
| saveScenarioResults | Save results of scenario simulations to csv. |
| Scenario | Scenario |
| ScenarioConfiguration | ScenarioConfiguration |
| sensitivityCalculation | Carry out and visualize sensitivity analysis (with OSPSuite) |
| sensitivitySpiderPlot | Sensitivity Spider Plot for Pharmacokinetic Parameters |
| sensitivityTimeProfiles | Time Profile plots for Sensitivity Analysis |
| sensitivityTornadoPlot | Tornado Plot for Sensitivity Analysis |
| setApplications | Set an application protocol in a 'Simulation' from the excel... |
| setParameterValuesByPathWithCondition | Set the values of parameters in the simulation by path, if... |
| sourceAll | Source all .R files located in a specific folder |
| stringToNum | Convert string to numeric |
| ULOQMode | Possible modes to treat values above the upper limit of... |
| writeIndividualToXLS | Create a parameter set describing an individual and write it... |
| writeParameterStructureToXLS | Write parameter structure to excel that can be loaded in MoBi |
