Description Usage Arguments Details Value
Convenience function for running Admixture.
1 | runAdmixture(filePath="/home/esteinig/admixture/butterflyfish.bed", K=1:10, processors=1, crossValidation=20, plotValidation=FALSE)
|
filePath |
Path to input files, either '.bed', '.ped' or '.geno' (see Admixture Manual) |
K |
Range of K for Admixture [ int vector, 1:10] |
processors |
Number of processors for analysis [ int, 1 ] |
crossValidation |
Number of cross-validation error iterations [ int, 20 ] |
plotValidation |
Return plot of cross-validation error across runs [ bool, FALSE ] |
admixturePath |
Path to admixture executable [ str, NULL ] |
Admixture executable can be in $PATH. If this is not working, you can specify the full path to the executable in admixturePath. For examples and tutorials, please see our GitHub Repository: https://github.com/esteinig/netview
K-named vector containing cross-validation errors or plot of cross-validation error across K.
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