API for estepi/ASpliD
Analysis of alternative splicing using RNA-Seq
| Global functions | |
|---|---|
| ASpli | Man page |
| ASpli-package | Man page |
| ASpliAS-class | Man page |
| ASpliCounts | Man page |
| ASpliCounts-class | Man page |
| ASpliDU-class | Man page |
| ASpliFeatures-class | Man page |
| AsDiscover | Man page |
| AsDiscover,ASpliCounts-method | Man page |
| DUreport | Man page |
| DUreport,ASpliCounts-method | Man page |
| DUreport_DEXSeq | Man page |
| DUreport_DEXSeq,ASpliCounts-method | Man page |
| altPSI | Man page |
| altPSI,ASpliAS-method | Man page |
| binGenome | Man page |
| binGenome,TxDb-method | Man page |
| binGenome-methods | Man page |
| binsDU | Man page |
| binsDU,ASpliDU-method | Man page |
| countsb | Man page |
| countsb,ASpliCounts-method | Man page |
| countse1i | Man page |
| countse1i,ASpliCounts-method | Man page |
| countsg | Man page |
| countsg,ASpliCounts-method | Man page |
| countsie2 | Man page |
| countsie2,ASpliCounts-method | Man page |
| countsj | Man page |
| countsj,ASpliCounts-method | Man page |
| esPSI | Man page |
| esPSI,ASpliAS-method | Man page |
| featuresb | Man page |
| featuresb,ASpliFeatures-method | Man page |
| featuresg | Man page |
| featuresg,ASpliFeatures-method | Man page |
| featuresj | Man page |
| featuresj,ASpliFeatures-method | Man page |
| genesDE | Man page |
| genesDE,ASpliDU-method | Man page |
| irPIR | Man page |
| irPIR,ASpliAS-method | Man page |
| joint | Man page |
| joint,ASpliAS-method | Man page |
| junctionsDU | Man page |
| junctionsDU,ASpliDU-method | Man page |
| junctionsPIR | Man page |
| junctionsPIR,ASpliAS-method | Man page |
| junctionsPSI | Man page |
| junctionsPSI,ASpliAS-method | Man page |
| loadBAM | Man page |
| plotTopTags | Man page |
| rds | Man page |
| rds,ASpliCounts-method | Man page |
| rdsb | Man page |
| rdsb,ASpliCounts-method | Man page |
| rdsg | Man page |
| rdsg,ASpliCounts-method | Man page |
| readCounts | Man page |
| readCounts,ASpliFeatures-method | Man page |
| show,ASpliAS-method | Man page |
| show,ASpliCounts-method | Man page |
| show,ASpliDU-method | Man page |
| show,ASpliFeatures-method | Man page |
| show-methods | Man page |
| writeAS | Man page |
| writeAS,ASpliAS-method | Man page |
| writeAS-methods | Man page |
| writeAll | Man page |
| writeAll,ANY-method | Man page |
| writeCounts | Man page |
| writeCounts,ASpliCounts-method | Man page |
| writeCounts-methods | Man page |
| writeDU | Man page |
| writeDU,ASpliDU-method | Man page |
| writeDU-methods | Man page |
| writeRds | Man page |
| writeRds,ASpliCounts-method | Man page |
| writeRds-methods | Man page |
