ASpliAS-class: Class '"ASpliAS"'

Description Slots Author(s) See Also

Description

Results of PSI and PIR using experimental junctions

Slots

irPIR:

Reports: event, e1i counts (J1), ie1 counts (J2), j_within (J3), PIR by condition. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

altPSI:

Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

esPSI:

Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

join:

It is a combination of irPIR, altPSI and esPSI tables

junctionsPIR:

PIR metric for each experimental junction using e1i and ie2 counts. Exclusion junction is the junction itself. This output helps to discover new introns as well as new retention events

junctionsPSI:

Given a junction, it is possible to analyze if it shares start, end or both with another junction. If so, is because there is more than one way for/of splicing. Using strand information it is possible to classify those pair of junctions into Alt5'ss, Alt3'ss or ES. Ratio between them along samples is reported.

Author(s)

Estefania Mancini, Marcelo Yanovsky, Ariel Chernomoretz

See Also

Methods: AsDiscover, Accesors: irPIR,esPSI,junctionsPIR,junctionsPSI


estepi/ASpliD documentation built on May 16, 2019, 8:53 a.m.