findSeeds: To find all seed compounds in the metabolic graph
In etheleon/MetamapsDB: MetamapsDB: R package for querying Metagenomics data against Metabolic Pathways and Gene Centric Assemblies
Description
Function finds strongly connected components within a bipartite metabolic network.
And selects for components with at least 1 outgoing edge and no inbound edges.
This is an implementation of Large-scale reconstruction and phylogenetic analysis of metabolic environments by Borenstein et al
Usage
1
findSeeds(mbgraph)
Arguments
mbgraph
igraph object representing the metabolic graph of interest
etheleon/MetamapsDB documentation built on May 16, 2019, 9:03 a.m.
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Description
Function finds strongly connected components within a bipartite metabolic network. And selects for components with at least 1 outgoing edge and no inbound edges. This is an implementation of Large-scale reconstruction and phylogenetic analysis of metabolic environments by Borenstein et al
Usage
1 | findSeeds(mbgraph)
|
Arguments
mbgraph |
igraph object representing the metabolic graph of interest |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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