Man pages for etnite/bwardr
Brian Ward personal R package
| calc_gmat | Calculate Realized Genomic Relationship Matrices |
| clean_dvec | Clean a vector of delimited strings |
| coindex | Calculate Coincidence Index |
| color_bar | Create a Color Bar |
| Cullis_H2 | Calculate Generalized Heritability from lme4 Model |
| eigstrat | Perform Eigenstrat marker PCA |
| env_connect | Evaluate connectivity between environments |
| estlambda | Estimate the inflation factor for a distribution of P-values |
| fdr_thresh | FDR threshold and SNP highlighting |
| fill_gap | Fill in a gap in recombination distance |
| flip_alleles | Flip alleles in a minor-allele dosage matrix |
| format_qtlmap_geno | Generate files for QTL mapping |
| gt2num | Convert VCF GT fields to numeric format |
| kasp_consensus | Generate consensus calls for KASP marker data |
| marker_pca | Perform PCA on marker data |
| match_names | Approximate matching between character vectors |
| mc_train_val_multienv | Monte Carlo training/validation splits for multi-environment... |
| randomize_headrows | Randomize Headrow Trays |
| simulate_plots | Simulate a multi-environment breeding trial |
| stand_str | Standardize character vectors to a common format |
| synonymize | Create common synonyms of strings |
| synop_dh92 | Synthetic x Opata genetic map, 92 DH lines |
| synop_ril906 | Synthetic x Opata genetic map, 906 RIL lines |
| t3_in_out | Convert between T3 input and output formats |
