fx.choose_vis_values_sce: Add visualization factors for ggplot2
In evanbiederstedt/sandbox: The functions

Description Usage Arguments Details Value See Also

Add visualization factors for ggplot2

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fx.choose_vis_values_sce(x, by, check_coldata = TRUE,
  cell_control_default = FALSE, check_features = FALSE,
  exprs_values = "counts", coerce_factor = FALSE, level_limit = NA)

`x`	`SingleCellExperiment` object
`by`	string indicating which factor will be checked
`check_coldata`	whether `colData(object)` should be checked for values of `by`; default: TRUE
`check_features`	whether `featureNames(object)` or `rownames(object)` should be checked for values of `by`; default: FALSE, which saves time
`exprs_values`	which type of expression values will be used if `by` is a feature
`level_limit`	maximum numbers of levels that are going to be allowed; usually only applicable if `by` defines a shape

This function looks through the visualization data and returns the values to be visualized. Either by itself, or a column of colData, or a column of rowData, or the expression values of a feature.

a list with the label of the factor (name) as well as the actual values that are going to be used for the plotting

fx.add_factors_to_redDim_df

evanbiederstedt/sandbox documentation built on May 26, 2019, 12:31 p.m.