nougad.benchmark: Benchmark the unmixing, print some interesting information,...

In exaexa/nougad: Non-linear Unmixing by Gradient Descent

Benchmark the unmixing, print some interesting information, plot out some plots

Description

Benchmark the unmixing, print some interesting information, plot out some plots

Usage

nougad.benchmark(
  n = 10240,
  k = 30,
  d = 40,
  rnw = 3,
  rpw = 1,
  nw = 5,
  rnwf = function(sp) rnw,
  rpwf = function(sp) rpw,
  nwf = function(sp) nw,
  iters = 250L,
  alpha = 0.02,
  accel = 1,
  threads = 0L,
  n_pheno = 20,
  pheno_positive_probability = 0.2,
  spectra_sdev = 0.2,
  spectra_intensity = 4,
  positive_population_intensity = 4,
  population_intensity_sdev = 0.1,
  emission_rate = 0.999,
  emission_quantum = 10,
  crosstalk_sdev = 5e-04,
  asinh_cofactor = 100,
  plotf = plot
)

exaexa/nougad documentation built on Jan. 30, 2023, 12:26 a.m.