README.md

In expfactory/expfactoryr: The Experiment Factory Data Processing in R

expfactoryr

R package for processing data generated by The Experiment Factory.

• Manifests are available on Github pages
• Containers described there are on Docker Hub.

Installation

library(devtools)
install_github('expfactory/expfactoryr')

Docker

See the Manifests to find a version that you like. The verisons correspond to the first 10 alphanumeric characters of the Github commit.

docker pull expfactory/expfactoryr

Build

To build the container locally:

docker build -t expfactory/expfactoryr . 

Usage

To use the container, you should mount your experiment package directory to /data. For example, if we have an experiment testing folder called "stroopr" in our present working directory, we would run:

docker run -v $PWD:/stroopr:/data expfactory/expfactoryr test

And the package would be installed, and tested per:

devtools::install_deps(dependencies=TRUE)
devtools::check()
devtools::test()

If you have a question, please don't hesitaite to open an issue.

expfactory/expfactoryr documentation built on Jan. 8, 2020, 1:56 p.m.