assay_info: Fetches assay meta information for the assays stored in a...

In facileverse/FacileData: A fluent API for accessing multi-assay high-throughput genomics data

Fetches assay meta information for the assays stored in a FacileDataStore

Description

Fetches assay meta information for the assays stored in a FacileDataStore

Usage

assay_info(x, assay_name = NULL, ...)

Arguments

x	A FacileDataStore
assay_name	optional name of the assay to get information for

Value

a tibble of meta information for the assays stored in x, with these columns:

• ⁠assay <chr>⁠: Name of the assay

• ⁠assay_type <chr>⁠: "rnaseq", "lognorm", etc. Look at FacileData:::.assay.types vector

• ⁠feature_type <chr>⁠: A string indicating the feature type to retrieve. we can use any name for a feature type, but "ensgid", "enstid", "entrez", have special meaning.

• ⁠description <chr>⁠: string description

• ⁠nfeatures <int>⁠: number of features we have info for

• ⁠storage_mode <chr>⁠: "integer", "numeric"

facileverse/FacileData documentation built on Feb. 24, 2024, 7:59 a.m.