RisingAshes: RisingAshes
In famuvie/2016_RisingAshes: Companion to the Paper "Rising Out of the Ashes"

Data and code to reproduce the results in Muñoz et al. (2016), which analyzes the genetic variation in susceptibility to a pathogen using a spatio-temporal hierarchical Bayesian model.

This package contains three vignettes with all the code necessary to reproduce the results from the paper (and more results that did not make it to the paper). You can browse the code with browseVignettes(package = 'RisingAshes') and work with the data with data(Devecey)

Since the computations can take several hours, all the expensive results are lazy-loaded with the package, so that you can explore the results without the need of recomputing everything. The code for producing the results is included in the vignettes, but is not executed by default at compilation time. For reproducing the results you might want to setup the computation on a server.

F. Muñoz, B. Marçais, J. Dufour and A. Dowkiw (2016). Rising Out of the Ashes: Additive Genetic Variation for Crown and Collar Resistance to Hymenoscyphus fraxineus in Fraxinus excelsior. Phytopathology. http://dx.doi.org/10.1094/PHYTO-11-15-0284-R

Preprint bioRXiv http://dx.doi.org/10.1101/031393

famuvie/2016_RisingAshes documentation built on May 16, 2019, 10:02 a.m.