GEM-package: GEM: Fast association study for the interplay of Gene,...
In fastGEM/GEM: GEM: fast association study for the interplay of Gene, Environment and Methylation
Description
Author(s)
References
See Also
Examples
Description
The GEM package provides a highly efficient R tool suite for performing epigenome wide association
studies (EWAS). GEM provides three major functions named GEM_Emodel,
GEM_Gmodel and GEM_GxEmodel to study the interplay of Gene,
Environment and Methylation (GEM). Within GEM, the existing "Matrix eQTL" package is
utilized and extended to study methylation quantitative trait loci (methQTL) and the
interaction of genotype and environment (GxE) to determine DNA methylation variation,
using matrix based iterative correlation and memory-efficient data analysis.
GEM can facilitate reliable genome-wide methQTL and GxE analysis on a standard laptop
computer within minutes.
Author(s)
Hong Pan
References
https://github.com/fastGEM/GEM
See Also
Examples
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## Launch GEM GUI
#GEM_GUI() # remove the hash symbol for running
## Checking the vignettes for more details
if(interactive()) browseVignettes(package = 'GEM')
fastGEM/GEM documentation built on Aug. 5, 2021, 7:33 p.m.
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Description Author(s) References See Also Examples
Description
The GEM package provides a highly efficient R tool suite for performing epigenome wide association
studies (EWAS). GEM provides three major functions named GEM_Emodel,
GEM_Gmodel and GEM_GxEmodel to study the interplay of Gene,
Environment and Methylation (GEM). Within GEM, the existing "Matrix eQTL" package is
utilized and extended to study methylation quantitative trait loci (methQTL) and the
interaction of genotype and environment (GxE) to determine DNA methylation variation,
using matrix based iterative correlation and memory-efficient data analysis.
GEM can facilitate reliable genome-wide methQTL and GxE analysis on a standard laptop
computer within minutes.
Author(s)
Hong Pan
References
https://github.com/fastGEM/GEM
See Also
Examples
1 2 3 4 5 | ## Launch GEM GUI
#GEM_GUI() # remove the hash symbol for running
## Checking the vignettes for more details
if(interactive()) browseVignettes(package = 'GEM')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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