VisualiseTwoGRanges: VisualiseTwoGRanges

In favorov/GenometriCorr: Genometric Correlation package

Description

VisualiseTwoGRanges is a function that displays the markups that are contatined two GRanges, in a multi-page pdf, page per chromosome, by VisualiseTwoIRanges for aech chromosome. The intent is to show large-scale relationships between the two markups. All the chromosome lenght data is provided by the GRanges.

Usage

VisualiseTwoGRanges(
  grA,
  grB,
  nameA = "RangesA",
  nameB = "RangesB",
  title = NA,
  pdf = NULL,
  close.device = NULL
)

Arguments

grA	First GRanges object to be vsualised.
grB	Second GRanges object to be vsualised.
nameA	Name of grA, default is 'RangesA'
nameB	Name of grB, default is 'RangesB'
title	Title, printed at the top of the plot.
pdf	Name of a file to which the image should be written. If pdf="" the filename is constructed from nameA and nameB. The suffix ".pdf" will be appended if not included. If NULL, no pdf is opened and an x11 window is raised up as by plot.
close.device	Whether to close the plot device after writing the image. A FALSE setting allows multiple images to be written to the same pdf file, but then eventually closing the device is up to the user. Default is NULL that means: close an x11, do not close a pdf.

Author(s)

Alexander Favorov [e-mail], Loris Mularoni, Yulia Medvedeva, Harris A. Jaffee, Ekaterina V. Zhuravleva, Leslie M. Cope, Andrey A. Mironov, Vsevolod J. Makeev, Sarah J. Wheelan.

References

GenometriCorr home

See Also

The GenometriCorr documentation and vignette.

favorov/GenometriCorr documentation built on March 30, 2021, 5:21 p.m.