closest.gene.by.interval: closest.gene.by.interval

Description Usage Arguments Value Author(s) See Also

View source: R/annotation.R

Description

Find the closest gene for each of the given set of intervals. Genes are provided by parameter or they are returned by get.Known.Gene.List for genome_id.

Usage

1
closest.gene.by.interval(noodles, genes = NA, genome.id = "gencode19")

Arguments

noodles

the GRanges list of intervals to look TSS in

genes

it is GRandes oject with the annotation genes. The gene_name matadata field is almost required, it passes the gene name to form output. The default is NA that means that the function will call get.Known.Gene.List

genome.id

is genome.annotation.id to call get.Known.Gene.List

Value

GRanges object, noodles argument with added closest gene info for each interval

Author(s)

Alexander Favorov, favorov@sensi.org

See Also

differential.coverage


favorov/differential.coverage documentation built on Feb. 18, 2022, 5:50 p.m.