extrapolateData: Extrapolate pilot data. Takes an input pilot dataset and...

Description Usage Arguments Value

Description

Extrapolate pilot data. Takes an input pilot dataset and extrapolates it to a desired size.

Usage

1
extrapolateData(pilotdata, nreps, depth, design = NULL)

Arguments

pilotdata

Numeric count matrix; pilot dataset to be extrapolated to a desired larger size.

nreps

Desired number of replicates per group in extrapolated data.

depth

Desired depth (in millions) for each sample/replicate in extrapolated data.

design

Model matrix (without an intercept) that you would like to simulate from

groups.pilot

Vector or factor giving the experimental group/condition for each sample/library in the pilot dataset. If not provided, groups are assumed equally divided.

Value

Extrapolated dataset, given pilot data


fayezor/fayezoR documentation built on May 16, 2019, 11:01 a.m.