kfolds2Chisqind: Computes individual Predicted Chisquare for k-fold cross...

In fbertran/plsRglm: Partial Least Squares Regression for Generalized Linear Models

Computes individual Predicted Chisquare for k-fold cross validated partial least squares regression models.

Description

This function computes individual Predicted Chisquare for k-fold cross validated partial least squares regression models.

Usage

kfolds2Chisqind(pls_kfolds)

Arguments

pls_kfolds

a k-fold cross validated partial least squares regression glm model

Value

list	Individual PChisq vs number of components for the first group partition
list()	...
list	Individual PChisq vs number of components for the last group partition

Note

Use cv.plsRglm to create k-fold cross validated partial least squares regression glm models.

Author(s)

Frédéric Bertrand
[e-mail]
https://fbertran.github.io/homepage/

References

Nicolas Meyer, Myriam Maumy-Bertrand et Frédéric Bertrand (2010). Comparing the linear and the logistic PLS regression with qualitative predictors: application to allelotyping data. Journal de la Societe Francaise de Statistique, 151(2), pages 1-18. http://publications-sfds.math.cnrs.fr/index.php/J-SFdS/article/view/47

See Also

kfolds2coeff, kfolds2Press, kfolds2Pressind, kfolds2Chisq, kfolds2Mclassedind and kfolds2Mclassed to extract and transforms results from k-fold cross-validation.

Examples

data(Cornell)
XCornell<-Cornell[,1:7]
yCornell<-Cornell[,8]
bbb <- cv.plsRglm(object=yCornell,dataX=XCornell,nt=3,modele="pls-glm-gaussian",K=16,verbose=FALSE)
bbb2 <- cv.plsRglm(object=yCornell,dataX=XCornell,nt=3,modele="pls-glm-gaussian",K=5,verbose=FALSE)
kfolds2Chisqind(bbb)
kfolds2Chisqind(bbb2)
rm(list=c("XCornell","yCornell","bbb","bbb2"))


data(pine)
Xpine<-pine[,1:10]
ypine<-pine[,11]
bbb <- cv.plsRglm(object=ypine,dataX=Xpine,nt=4,modele="pls-glm-gaussian",verbose=FALSE)
bbb2 <- cv.plsRglm(object=ypine,dataX=Xpine,nt=10,modele="pls-glm-gaussian",K=10,verbose=FALSE)
kfolds2Chisqind(bbb)
kfolds2Chisqind(bbb2)
                  
XpineNAX21 <- Xpine
XpineNAX21[1,2] <- NA
bbbNA <- cv.plsRglm(object=ypine,dataX=XpineNAX21,nt=10,modele="pls",K=10,verbose=FALSE)
kfolds2Pressind(bbbNA)
kfolds2Chisqind(bbbNA)
bbbNA2 <- cv.plsRglm(object=ypine,dataX=XpineNAX21,nt=4,modele="pls-glm-gaussian",verbose=FALSE)
bbbNA3 <- cv.plsRglm(object=ypine,dataX=XpineNAX21,nt=10,modele="pls-glm-gaussian",
K=10,verbose=FALSE)
kfolds2Chisqind(bbbNA2)
kfolds2Chisqind(bbbNA3)
rm(list=c("Xpine","XpineNAX21","ypine","bbb","bbb2","bbbNA","bbbNA2","bbbNA3"))


data(aze_compl)
Xaze_compl<-aze_compl[,2:34]
yaze_compl<-aze_compl$y
kfolds2Chisqind(cv.plsRglm(object=yaze_compl,dataX=Xaze_compl,nt=4,modele="pls-glm-family",
family=binomial(),verbose=FALSE))
kfolds2Chisqind(cv.plsRglm(object=yaze_compl,dataX=Xaze_compl,nt=4,modele="pls-glm-logistic",
verbose=FALSE))
kfolds2Chisqind(cv.plsRglm(object=yaze_compl,dataX=Xaze_compl,nt=10,modele="pls-glm-family",
family=binomial(),K=10,verbose=FALSE))
kfolds2Chisqind(cv.plsRglm(object=yaze_compl,dataX=Xaze_compl,nt=10,
modele="pls-glm-logistic",K=10,verbose=FALSE))
rm(list=c("Xaze_compl","yaze_compl"))

fbertran/plsRglm documentation built on March 23, 2023, 2:14 a.m.