write.report: Write microarray report
In fboulnois/made: Microarray Analysis of Differential Expression

Description Usage Arguments Details Value Examples

Generate the final microarray report.

1	write.report(config, eset, results)

`config`	Character string consisting of the path to the configuration file generated using the `write.yaml.config` function or parsed configuration list associated with a microarray experiment.
`eset`	Expression set object describing microarray experiment at the level of probes.
`results`	A summary of all the data in the expression set for each group comparison generated using the `ma.summarize` function.

Generates the microarray report summarizing the information in the experiment. The information in the report depends on the config and the packages available.

A character string consisting of the path to the microarray report.

if(require(madeData))
{
  dataPath <- system.file("extdata", package = "madeData")
  config <- file.path(dataPath, "config.yaml")
  eset <- readRDS(file.path(dataPath, "eset.rds"))
  results <- readRDS(file.path(dataPath, "results.rds"))
  write.report(config, eset, results)
}